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3D Image Processing and Analysis

Abstract:

Modern microscopical techniques yields 3D and more generally multi-dimensional images, such as 3D images with LSCM, and even 4D including time, and 5D including numerous channels. Important developments have been done for visualization of such images in ImageJ such as VolumeViewer, Image5D or Image3DViewer, however few plugins focused on the 3D information in the images, most processing are done slice by slice, and few plugins (including 3DObjectcounter) performs 3D measurements. This workshop will emphasize on the 3D tools from visualization, processing and automated measurements of images using freely available plugins for ImageJ.

Keywords:
3D, 4D, 5D, Image processing, Image Analysis, LSCM,

Requirements
none

Author
Thomas Boudier

Organisation
University Pierre et Marie Curie, Paris, France

Homepage http://english.upmc.fr/UK/info/00


Short Biography
Master in Mathematics and Image Processing in 1992 and 1993; PhD in computer sciences applied to biology in 1997. Lecturer in Image Processing applied to biology at University Pierre et Marie Curie since 1999. Interest in biological imaging, especially 3D imaging in fluorescence or electron microscopy. Development of numerous plugins for 3D processing and analysis.

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