News |  Sitemap |  Contact
PDF Export  | 

MRI Cell Image Analyzer – A visual scripting interface for ImageJ and its usage at the microscopy platform Montpellier RIO Imaging

Administrative Information

Organisation

Montpellier RIO Imaging (FRE 2593), CNRS

Presentation Information

Full / Half Time Slot: Full Time Slot (50 min)

Contact / Speaker Name

Volker Bäcker

Presentation Title

MRI Cell Image Analyzer – A visual scripting interface for ImageJ and its usage at the microscopy platform Montpellier RIO Imaging

Participant Requirements

Participants should be familiar with the usage of ImageJ and be interested in development.

Bibliography of Speaker

Eine Entwicklungsumgebung für zelluläre Automaten mit unscharfen Regeln, master thesis, Universität Dortmund, 1999

Mustererkennung, in Seminarband der Projektgruppe 294, Baukasten für die Analyse und Modellierung von Bildobjekten aufgrund unscharfen Wissens, Universität Dortmund, 1996

Abstract

A rapid image analysis application development framework called “Cell Image Analyzer” based on ImageJ is presented. It adds a visual scripting interface to ImageJ's capabilities, which allows creating applications from existing operations by drag and drop. It provides support to create batch applications as well as interactive applications. “Cell Image Analyzer” is used at the microscopy facility Montpellier RIO Imaging to create custom image analysis applications and to solve automation tasks. The applications include the topics “DNA combing”, “quantication of stained proteins in cells”, “comparison of intensity ratios between nuclei and cytoplasm” and “counting nuclei stained in dierent channels”.

© Luxembourg Institute of Science and Technology | Legal Notice